Table 1

Description of functional features shown in figure 5

M00064DP-L-glycero-D-manno-heptose biosynthesis
M00079Keratan sulphate degradation
M00191Thiamine transport system
M00229Arginine transport system
M00233*Glutamate transport system
M00287PTS system, galactosamine-specific II component
M00316Manganese transport system
M00326RTX toxin transport system
M00339RaxAB-RaxC type I secretion system
M00358*Coenzyme M biosynthesis
M00373Ethylmalonyl pathway
M00434PhoR-PhoB (phosphate starvation response) two-component regulatory system
M00442Putative hydroxymethylpyrimidine transport system
M00443SenX3-RegX3 (phosphate starvation response) two-component regulatory system
M00447CpxA-CpxR (envelope stress response) two-component regulatory system
M00448CssS-CssR (secretion stress response) two-component regulatory system
M00499HydH-HydG (metal tolerance) two-component regulatory system
M00456ArcB-ArcA (anoxic redox control) two-component regulatory system
M00472NarQ-NarP (nitrate respiration) two-component regulatory system
M00566*Dipeptide transport system
M00571AlgE-type Mannuronan C-5-Epimerase transport system
M00601Putative chitobiose transport system
M00696Multidrug resistance, efflux pump AcrEF-TolC
M00697Multidrug resistance, efflux pump MdtEF-TolC
M00713*Fluoroquinolone resistance, efflux pump LfrA
M00714*Multidrug resistance, efflux pump QacA
M00720Multidrug resistance, efflux pump VexEF-TolC
M00739Cationic peptide transport system
  • All KEGG modules found to be significantly different between baseline and week 1 samples are shown, includingall modules identified in samples with reads from dominant taxa present (those in figure 5B), as well as the 20 modules identified with the largest effect size after reads from dominant taxa were removed (figure 5D). Asterisks indicate modules identified in the analyses shown in both figure 5B,D.