Table 1

Primer sequences, genomic localisation, cycle profiles, and the expected length of the PCR product

VirusPrimerPrimer sequence 5`- 3` directionGenomic positionCycle profile (40×)Length of PCR product (bp)
*HRV and enterovirus are referred to as picornaviruses.
RSV28G1CCA TTC TGG CAA TGA TAA TCT CGlycoprotein gene55°C/1min – 72°C/2min – 95°C/1min
G2GTT TTT TGT TTG GTA TTC TTT TGC AG
G3CGG CAA ACC ACA AAG TCA CAC50°C/1min – 72°C/2min – 95°C/1min326
G4GGG TAC AAA GTT AAA CAC TTC
Influenza AAnp1ATC ACT CAC TGA GTG ACA TCNucleoprotein gene55°C/1min – 72°C/2min – 95°C/1min
Anp2CCT CCA GTT TTC TTA GGA TC
Anp3CAT GGC GTC CCA AGG CAC C55°C/1min – 72°C/2min – 95°C/1min271
Anp4CCT AGG ATC CTT CCC CGC
Influenza BBns1CGG ACA ACA TGA CCA CAA CNon-structural gene50°C/1min – 72°C/2min – 95°C/1min
Bns2TCT CTC TTC AAG AGA CAT CC
Bns3CCA CAA CAC AAA TTG AGG TG50°C/1min – 72°C/2min – 95°C/1min201
Bns4CAT CCT TTT ACT TTC AGG
PIV 3PIV 3-1AGA AGT CAA TAC CAA CAA CTAFusion protein gene50°C/1min – 72°C/2min – 95°C/1min
PIV 3-4GGC AGA AAG ATG CCA TAA TCA TGG
PIV 3-2GCA GTA TTG AGG TTG GCA TGA TG55°C/1min – 72°C/2min – 95°C/1min183
PIV 3-3TTA GCA GCC ACA CTC GCT GG
HRV*Rh1CGG ACA CCC AAA GTA ANon-translated region44°C/1min – 72°C/2min – 95°C/1min
Rh2GCA CTT CTG TTT CCC C
Rh2GCA CTT CTG TTT CCC C44°C/1min – 72°C/2min – 95°C/1min204
Rh3GGC AGC CAC GCA GGC T
Enterovirus*Rh1CGG ACA CCC AAA GTA APolyprotein gene44°C/1min – 72°C/2min – 95°C/1min
Rh2GCA CTT CTG TTT CCC C
Rh2GCA CTT CTG TTT CCC C44°C/1min – 72°C/2min – 95°C/1min297
PV4GCA TTC AGG GGC CGG AG