Primer sequences, genomic localisation, cycle profiles, and the expected length of the PCR product
Virus | Primer | Primer sequence 5`- 3` direction | Genomic position | Cycle profile (40×) | Length of PCR product (bp) |
---|---|---|---|---|---|
*HRV and enterovirus are referred to as picornaviruses. | |||||
RSV28 | G1 | CCA TTC TGG CAA TGA TAA TCT C | Glycoprotein gene | 55°C/1min – 72°C/2min – 95°C/1min | |
G2 | GTT TTT TGT TTG GTA TTC TTT TGC AG | ||||
G3 | CGG CAA ACC ACA AAG TCA CAC | 50°C/1min – 72°C/2min – 95°C/1min | 326 | ||
G4 | GGG TAC AAA GTT AAA CAC TTC | ||||
Influenza A | Anp1 | ATC ACT CAC TGA GTG ACA TC | Nucleoprotein gene | 55°C/1min – 72°C/2min – 95°C/1min | |
Anp2 | CCT CCA GTT TTC TTA GGA TC | ||||
Anp3 | CAT GGC GTC CCA AGG CAC C | 55°C/1min – 72°C/2min – 95°C/1min | 271 | ||
Anp4 | CCT AGG ATC CTT CCC CGC | ||||
Influenza B | Bns1 | CGG ACA ACA TGA CCA CAA C | Non-structural gene | 50°C/1min – 72°C/2min – 95°C/1min | |
Bns2 | TCT CTC TTC AAG AGA CAT CC | ||||
Bns3 | CCA CAA CAC AAA TTG AGG TG | 50°C/1min – 72°C/2min – 95°C/1min | 201 | ||
Bns4 | CAT CCT TTT ACT TTC AGG | ||||
PIV 3 | PIV 3-1 | AGA AGT CAA TAC CAA CAA CTA | Fusion protein gene | 50°C/1min – 72°C/2min – 95°C/1min | |
PIV 3-4 | GGC AGA AAG ATG CCA TAA TCA TGG | ||||
PIV 3-2 | GCA GTA TTG AGG TTG GCA TGA TG | 55°C/1min – 72°C/2min – 95°C/1min | 183 | ||
PIV 3-3 | TTA GCA GCC ACA CTC GCT GG | ||||
HRV* | Rh1 | CGG ACA CCC AAA GTA A | Non-translated region | 44°C/1min – 72°C/2min – 95°C/1min | |
Rh2 | GCA CTT CTG TTT CCC C | ||||
Rh2 | GCA CTT CTG TTT CCC C | 44°C/1min – 72°C/2min – 95°C/1min | 204 | ||
Rh3 | GGC AGC CAC GCA GGC T | ||||
Enterovirus* | Rh1 | CGG ACA CCC AAA GTA A | Polyprotein gene | 44°C/1min – 72°C/2min – 95°C/1min | |
Rh2 | GCA CTT CTG TTT CCC C | ||||
Rh2 | GCA CTT CTG TTT CCC C | 44°C/1min – 72°C/2min – 95°C/1min | 297 | ||
PV4 | GCA TTC AGG GGC CGG AG |